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 MutCombinator ( Software download )
MutCombinator: identification of mutated peptides allowing combinatorial mutations using nucleotide-based graph search.
Seunghyuk Choi and Eunok Paek.
Bioinformatics, 2020, 7, i203-i209. [ PMID: 32657416 ]
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MODplus ( Software download )
MODplus: Robust and Unrestrictive Identification of Post-Translational Modifications Using Mass Spectrometry.
Seunjin Na, Jihyung Kim and Eunok Paek.
Analytical Chemistry, 2019, 91, 17, 11324-11333. [ PMID: 31365238 ]
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deMix ( Software download )
deMix: Decoding Deuterated Distributions from Heterogeneous Protein States vis HDX-MS
Seungjin Na, Jae-Jin Lee, Jong Wha J. Joo, Kong-Joo Lee and Eunok Paek.
Scientific Reports, 2019, 9, 3176. [ PMID: 30816214 ]
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ACTG ( Software download )
ACTG: novel peptide mapping onto gene models.
Seunghyuk Choi, Hyunwoo Kim, and Eunok Paek.
Bioinformatics, 2017, 33(8), 1218-1220. [ PMID: 28031186 ]
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NextSearch ( Software download )
NextSearch: A Search Engine for Mass Spectrometry Data against a Compact Nucleotide Exon Graph.
Hyunwoo Kim, Heejin Park, and Eunok Paek.
Journal of Proteome Research, 2015, 14(7), 2784-2791. [ PMID: 26004133 ]
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MODa ( Software download )
Fast multi-blind modification search through tandem mass spectrometry.
Seungjin Na, Nuno Bandeira, and Eunok Paek.
Molecular and Cellular Proteomics, 2012, 11, M111.010199. [ PMID: 22186716 ]
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DBond ( Software download )
New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra.
Seonhwa Choi, Jaeho Jeong, Seungjin Na, Hyo Sun Lee, Hwa-Young Kim, Kong-Joo Lee, and Eunok Paek.
Journal of Proteome Research, 2010, 9, 626-635. [ PMID: 19902913 ]
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MODmap
Prediction of novel modifications by unrestrictive search of tandem mass spectra.
Seungjin Na and Eunok Paek.
Journal of Proteome Research, 2009, 8, 4418-4427. [ PMID: 19658439 ]
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MODi
Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach.
Seungjin Na, Jaeho Jeong, Heejin Park, Kong-Joo Lee, and Eunok Paek.
Molecular and Cellular Proteomics, 2008, 7, 2452-2463. [ PMID: 18701446 ]
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